PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG136500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 312aa    MW: 33637.6 Da    PI: 6.0832
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG136500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12134181355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h ++Er+RR+++ + f  L +++P +     +K +K++iL  +++Y+k+L+
  Pavir.8KG136500.1.p 134 QEHVAAERKRREKMQQQFVALATMVPDL-----TKTDKISILGSTIQYVKQLE 181
                          5799***********************9.....9*****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.691131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-10134181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-17135196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.99E-11136185No hitNo description
SuperFamilySSF474592.49E-15136196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-13137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDEANKYNSS HPEPDADDHQ DELAYMYQQE EHAGMQQLFQ DPHPHPLHHA LAMSGFQRFG  60
SASALPDLSF GGAAAVAVKT EQGQPSLSRS GILSFGALPP AARTLSFSGG EDWPDVAVEG  120
VPPERRSRSH LSAQEHVAAE RKRREKMQQQ FVALATMVPD LTKTDKISIL GSTIQYVKQL  180
EEKVKTLEKQ QSERRTTSEG FEGKGHASST DSQQAPGPSG STHGVGSSIP TVEASIHGDT  240
VLLKICCERR SGVLVMIISE LESLGLSILN TSVFPFSSSY FSINITAKIG EGFSTTVELV  300
KNLTTALRGF S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144ERKRRE
2140145RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004987096.21e-104PREDICTED: transcription factor bHLH25-like
TrEMBLK3ZLF01e-106K3ZLF0_SETIT; Uncharacterized protein
STRINGSi027407m1e-106(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-31bHLH family protein